Journal of Fungal Diversity

Journal of Fungal Diversity

Journal of Fungal Diversity – Aim And Scope

Open Access & Peer-Reviewed

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Aims and Scope

Journal of Fungal Diversity publishes research on fungal taxonomy, systematics, phylogeny, ecology, evolution, biogeography, and conservation, advancing understanding of fungal biodiversity across terrestrial and aquatic ecosystems worldwide.
Fungal Taxonomy Phylogenetics Fungal Ecology Biodiversity Evolution Biogeography

Research Domains

Tier 1: Core Research Areas

Fungal Systematics & Taxonomy

  • Species identification and classification
  • Morphological and molecular characterization
  • Nomenclatural revisions and typification
  • Phylogenetic relationships and evolutionary history
  • DNA barcoding and metabarcoding
  • Taxonomic monographs and revisions
Typical Fit:

Multi-gene phylogenetic analysis revealing cryptic species complexes in Aspergillus section Nigri with morphological descriptions and epitypification.

Fungal Ecology & Biogeography

  • Community ecology and species assemblages
  • Ecosystem roles and functional diversity
  • Geographic distribution patterns
  • Habitat specialization and niche partitioning
  • Fungal responses to environmental gradients
  • Conservation biology and threatened species
Typical Fit:

Biogeographic analysis of saprobic fungi across tropical rainforests examining species turnover along elevation gradients and climate variables.

Fungal Biodiversity & Evolution

  • Species richness and diversity patterns
  • Evolutionary adaptations and innovations
  • Population genetics and phylogeography
  • Speciation mechanisms and reproductive isolation
  • Comparative genomics and phylogenomics
  • Molecular evolution and divergence dating
Typical Fit:

Population genetic structure of mycorrhizal fungi across fragmented forest landscapes revealing gene flow barriers and local adaptation signatures.

Fungal Symbioses & Interactions

  • Mycorrhizal associations and plant symbioses
  • Endophytic fungi in plant tissues
  • Lichen-forming fungi and photobiont interactions
  • Fungal-fungal interactions and mycoparasitism
  • Fungal roles in nutrient cycling
  • Biotic interactions in natural ecosystems
Typical Fit:

Diversity and host specificity of ectomycorrhizal fungi in temperate oak forests with network analysis of plant-fungal associations.

Tier 2: Secondary Focus Areas

Molecular Biology & Genomics

Fungal genomics, transcriptomics, and functional gene studies that illuminate evolutionary processes, biodiversity patterns, or ecological adaptations in natural populations.

Fungal Physiology & Biochemistry

Metabolic pathways, enzymatic systems, and biochemical adaptations in ecological contexts, particularly secondary metabolite production in natural environments.

Environmental Mycology

Fungal responses to climate change, pollution, habitat fragmentation, and anthropogenic disturbances in natural ecosystems.

Aquatic & Freshwater Mycology

Diversity, ecology, and systematics of fungi in freshwater, marine, and wetland habitats, including saprobic and parasitic species.

Fungal Conservation

Threatened species assessments, conservation strategies, biodiversity monitoring, and impacts of habitat loss on fungal communities.

Computational Mycology

Bioinformatics approaches to fungal classification, phylogenetics, species delimitation, and biodiversity informatics.

Tier 3: Emerging Research Frontiers

Selective Consideration Areas

  • AI and machine learning for fungal identification and classification
  • Environmental DNA metabarcoding for biodiversity assessment
  • Fungal microbiomes and community assembly processes
  • Hypogeous fungi diversity and ecology
  • Fungal networks and mycorrhizal network dynamics
  • Citizen science approaches to fungal biodiversity documentation
Note: Manuscripts in these areas undergo additional editorial review to ensure alignment with core mission. Emphasis must be on biodiversity, ecology, or systematics rather than purely methodological development.

Article Types & Priorities

Priority 1: Fast-Track

Expedited Review

Original Research Articles
Taxonomic Revisions
Systematic Reviews
Phylogenomic Studies
Biodiversity Assessments
Monographs
Priority 2: Standard

Regular Review Timeline

Short Communications
Data Notes
Perspectives
Methods & Protocols
Review Articles
Rarely Considered

Exceptional Cases Only

Opinion Pieces
Commentaries
Book Reviews

Editorial Standards

Reporting Guidelines

  • ARRIVE guidelines for ecological studies
  • MIMARKS standards for metabarcoding data
  • PRISMA for systematic reviews
  • Transparent reporting of methods and analyses
  • Complete taxonomic authorities and voucher information

Data & Materials Policy

  • DNA sequences deposited in GenBank/EMBL
  • Cultures deposited in recognized collections
  • Type specimens in herbaria with accession numbers
  • Raw data availability in public repositories
  • Code and scripts shared via GitHub/Zenodo

Ethics & Permissions

  • Collection permits for protected areas
  • Nagoya Protocol compliance for genetic resources
  • Indigenous knowledge acknowledgment
  • Ethical field sampling practices
  • Institutional review for collaborative research

Preprint & Publication Policy

  • Preprints welcomed (bioRxiv, EcoEvoRxiv)
  • No dual submission to other journals
  • Prior conference presentations permitted
  • Thesis chapters acceptable with disclosure
  • Open access with CC BY 4.0 licensing

Decision Metrics

21 days Time to First Decision
54% Acceptance Rate
65 days Time to Publication
$1,200 Article Processing Charge